Efficiency of Universal Barcode Gene (Coxi) on morphologically cryptic mugilidae fishes delineation

An effort was made to assess the utility of 650 bp partial Cytochrome C oxidase subunit I (DNA barcode) gene in delineating the members of taxonomically ambiguous marine fin fishes (Family: Mugilidae). To address the issue we used all the 95 barcode sequences of Mugilidae family available at NCBI...

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Main Authors:	John, Akbar, Kumar, C. Prasanna, Khan, S. Ajmal, Lyla, P.S., Murugan, S., Mohamed, Rozihan, Khan Chowdhury, Ahmed Jalal
Format:	Article
Language:	English
Published:	Academic Journals Inc., USA 2011
Subjects:	QL Zoology
Online Access:	http://irep.iium.edu.my/4205/ http://irep.iium.edu.my/4205/ http://irep.iium.edu.my/4205/ http://irep.iium.edu.my/4205/1/1028-1036.pdf

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spelling	iium-42052017-12-07T05:27:55Z http://irep.iium.edu.my/4205/ Efficiency of Universal Barcode Gene (Coxi) on morphologically cryptic mugilidae fishes delineation John, Akbar Kumar, C. Prasanna Khan, S. Ajmal Lyla, P.S. Murugan, S. Mohamed, Rozihan Khan Chowdhury, Ahmed Jalal QL Zoology An effort was made to assess the utility of 650 bp partial Cytochrome C oxidase subunit I (DNA barcode) gene in delineating the members of taxonomically ambiguous marine fin fishes (Family: Mugilidae). To address the issue we used all the 95 barcode sequences of Mugilidae family available at NCBI (National Centre for Biotechnological Information) along with the barcode data generated from Mugilidae fishes of Parangipettai coastal waters. The average GC content of Mugilidae was found to be 46.46%. Crenimugil crenilabis showed less GC content (44.55%) whereas Liza macrolepis showed high GC content (48.53%) among the mullet species studied. The phylogenetic and genetic distance data showed that Mugil platanus and M. liza represent the continuum of same species. Among the members of family Mugilidae, the genus Mugil might possibly contains more haplotype diversity as revealed by intra-species genetic distance data. Species within genera of Mugilidae family invariably clustered in single clade with high bootstrap value. We conclude that partial COI sequencing (barcoding) in identifying the members of the family and that way has resolved the taxonomic ambiguity among the members of the family Mugilidae. Academic Journals Inc., USA 2011 Article PeerReviewed application/pdf en http://irep.iium.edu.my/4205/1/1028-1036.pdf John, Akbar and Kumar, C. Prasanna and Khan, S. Ajmal and Lyla, P.S. and Murugan, S. and Mohamed, Rozihan and Khan Chowdhury, Ahmed Jalal (2011) Efficiency of Universal Barcode Gene (Coxi) on morphologically cryptic mugilidae fishes delineation. Trends in Applied Sciences Research, 6 (9). pp. 1028-1036. ISSN 1819-3579 (P), 2151-7908 (O) http://academicjournalsinc.com/current.php?jid=1819-3579 10.3923/tasr.2011.1028.1036
repository_type	Digital Repository
institution_category	Local University
institution	International Islamic University Malaysia
building	IIUM Repository
collection	Online Access
language	English
topic	QL Zoology
spellingShingle	QL Zoology John, Akbar Kumar, C. Prasanna Khan, S. Ajmal Lyla, P.S. Murugan, S. Mohamed, Rozihan Khan Chowdhury, Ahmed Jalal Efficiency of Universal Barcode Gene (Coxi) on morphologically cryptic mugilidae fishes delineation
description	An effort was made to assess the utility of 650 bp partial Cytochrome C oxidase subunit I (DNA barcode) gene in delineating the members of taxonomically ambiguous marine fin fishes (Family: Mugilidae). To address the issue we used all the 95 barcode sequences of Mugilidae family available at NCBI (National Centre for Biotechnological Information) along with the barcode data generated from Mugilidae fishes of Parangipettai coastal waters. The average GC content of Mugilidae was found to be 46.46%. Crenimugil crenilabis showed less GC content (44.55%) whereas Liza macrolepis showed high GC content (48.53%) among the mullet species studied. The phylogenetic and genetic distance data showed that Mugil platanus and M. liza represent the continuum of same species. Among the members of family Mugilidae, the genus Mugil might possibly contains more haplotype diversity as revealed by intra-species genetic distance data. Species within genera of Mugilidae family invariably clustered in single clade with high bootstrap value. We conclude that partial COI sequencing (barcoding) in identifying the members of the family and that way has resolved the taxonomic ambiguity among the members of the family Mugilidae.
format	Article
author	John, Akbar Kumar, C. Prasanna Khan, S. Ajmal Lyla, P.S. Murugan, S. Mohamed, Rozihan Khan Chowdhury, Ahmed Jalal
author_facet	John, Akbar Kumar, C. Prasanna Khan, S. Ajmal Lyla, P.S. Murugan, S. Mohamed, Rozihan Khan Chowdhury, Ahmed Jalal
author_sort	John, Akbar
title	Efficiency of Universal Barcode Gene (Coxi) on morphologically cryptic mugilidae fishes delineation
title_short	Efficiency of Universal Barcode Gene (Coxi) on morphologically cryptic mugilidae fishes delineation
title_full	Efficiency of Universal Barcode Gene (Coxi) on morphologically cryptic mugilidae fishes delineation
title_fullStr	Efficiency of Universal Barcode Gene (Coxi) on morphologically cryptic mugilidae fishes delineation
title_full_unstemmed	Efficiency of Universal Barcode Gene (Coxi) on morphologically cryptic mugilidae fishes delineation
title_sort	efficiency of universal barcode gene (coxi) on morphologically cryptic mugilidae fishes delineation
publisher	Academic Journals Inc., USA
publishDate	2011
url	http://irep.iium.edu.my/4205/ http://irep.iium.edu.my/4205/ http://irep.iium.edu.my/4205/ http://irep.iium.edu.my/4205/1/1028-1036.pdf
first_indexed	2023-09-18T20:12:20Z
last_indexed	2023-09-18T20:12:20Z
_version_	1777407560284897280

Efficiency of Universal Barcode Gene (Coxi) on morphologically cryptic mugilidae fishes delineation

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