Integrated the different data from the variety database for querying motif sequence / Mohd Taufik Mishan, Zanariah Idrus and Jasmin Ilyani Ahmad

In performing protein secondary structure prediction procedures, biologists need to use variety types of sequence data from multiple biological repositories which are available publicly in the Internet. A lot of researches have been done in minimizing the numbers of repositories needed for the predi...

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Main Authors:	Mishan, Mohd Taufik, Idrus, Zanariah, Ahmad, Jasmin Ilyani
Format:	Research Reports
Language:	English
Published:	Research Management Institute 2014
Subjects:	Electronic computers. Computer science Multimedia systems Database management
Online Access:	http://ir.uitm.edu.my/id/eprint/22434/ http://ir.uitm.edu.my/id/eprint/22434/1/LP_MOHD%20TAUFIK%20MISHAN%20IRMI%20K%2014_5.pdf

id	uitm-22434
recordtype	eprints
spelling	uitm-224342018-12-13T02:05:06Z http://ir.uitm.edu.my/id/eprint/22434/ Integrated the different data from the variety database for querying motif sequence / Mohd Taufik Mishan, Zanariah Idrus and Jasmin Ilyani Ahmad Mishan, Mohd Taufik Idrus, Zanariah Ahmad, Jasmin Ilyani Electronic computers. Computer science Multimedia systems Database management In performing protein secondary structure prediction procedures, biologists need to use variety types of sequence data from multiple biological repositories which are available publicly in the Internet. A lot of researches have been done in minimizing the numbers of repositories needed for the prediction procedures. However, due to the size complexity and numbers of repositories used has created a major challenge in integrating all different data into one repository or database. This challenge is known as syntactic heterogeneity problem. The aim of this research is to overcome the problem by transforming all the different data form variety of databases such as Prosite, Blast, Print and PDB into flat file format and other format into relational form using XML and asp dot net. From studies that have been conducted, XML approach is considered as a better choice for biological data integration. And this research has reveals that query made from relational database incorporating XML schema gives better query performance after integrating the variety data into one repository or relational database using metadata framework. As a result, this research showed some tool can search different data and different sizes of protein secondary structure data stored in the relational database and the result can be retrieved faster and reliable. Research Management Institute 2014-04 Research Reports NonPeerReviewed text en http://ir.uitm.edu.my/id/eprint/22434/1/LP_MOHD%20TAUFIK%20MISHAN%20IRMI%20K%2014_5.pdf Mishan, Mohd Taufik and Idrus, Zanariah and Ahmad, Jasmin Ilyani (2014) Integrated the different data from the variety database for querying motif sequence / Mohd Taufik Mishan, Zanariah Idrus and Jasmin Ilyani Ahmad. [Research Reports] (Unpublished)
repository_type	Digital Repository
institution_category	Local University
institution	Universiti Teknologi MARA
building	UiTM Institutional Repository
collection	Online Access
language	English
topic	Electronic computers. Computer science Multimedia systems Database management
spellingShingle	Electronic computers. Computer science Multimedia systems Database management Mishan, Mohd Taufik Idrus, Zanariah Ahmad, Jasmin Ilyani Integrated the different data from the variety database for querying motif sequence / Mohd Taufik Mishan, Zanariah Idrus and Jasmin Ilyani Ahmad
description	In performing protein secondary structure prediction procedures, biologists need to use variety types of sequence data from multiple biological repositories which are available publicly in the Internet. A lot of researches have been done in minimizing the numbers of repositories needed for the prediction procedures. However, due to the size complexity and numbers of repositories used has created a major challenge in integrating all different data into one repository or database. This challenge is known as syntactic heterogeneity problem. The aim of this research is to overcome the problem by transforming all the different data form variety of databases such as Prosite, Blast, Print and PDB into flat file format and other format into relational form using XML and asp dot net. From studies that have been conducted, XML approach is considered as a better choice for biological data integration. And this research has reveals that query made from relational database incorporating XML schema gives better query performance after integrating the variety data into one repository or relational database using metadata framework. As a result, this research showed some tool can search different data and different sizes of protein secondary structure data stored in the relational database and the result can be retrieved faster and reliable.
format	Research Reports
author	Mishan, Mohd Taufik Idrus, Zanariah Ahmad, Jasmin Ilyani
author_facet	Mishan, Mohd Taufik Idrus, Zanariah Ahmad, Jasmin Ilyani
author_sort	Mishan, Mohd Taufik
title	Integrated the different data from the variety database for querying motif sequence / Mohd Taufik Mishan, Zanariah Idrus and Jasmin Ilyani Ahmad
title_short	Integrated the different data from the variety database for querying motif sequence / Mohd Taufik Mishan, Zanariah Idrus and Jasmin Ilyani Ahmad
title_full	Integrated the different data from the variety database for querying motif sequence / Mohd Taufik Mishan, Zanariah Idrus and Jasmin Ilyani Ahmad
title_fullStr	Integrated the different data from the variety database for querying motif sequence / Mohd Taufik Mishan, Zanariah Idrus and Jasmin Ilyani Ahmad
title_full_unstemmed	Integrated the different data from the variety database for querying motif sequence / Mohd Taufik Mishan, Zanariah Idrus and Jasmin Ilyani Ahmad
title_sort	integrated the different data from the variety database for querying motif sequence / mohd taufik mishan, zanariah idrus and jasmin ilyani ahmad
publisher	Research Management Institute
publishDate	2014
url	http://ir.uitm.edu.my/id/eprint/22434/ http://ir.uitm.edu.my/id/eprint/22434/1/LP_MOHD%20TAUFIK%20MISHAN%20IRMI%20K%2014_5.pdf
first_indexed	2023-09-18T23:08:40Z
last_indexed	2023-09-18T23:08:40Z
_version_	1777418655238193152

Integrated the different data from the variety database for querying motif sequence / Mohd Taufik Mishan, Zanariah Idrus and Jasmin Ilyani Ahmad

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