Systemic biology of Geobacillus thermocatenulatus upon thermal stress induced by high temperature / Mohd Nur Fakhruzzaman Noorizhab

Systemic biology of Geobacillus thermocatenulatus upon thermal stress induced by high temperature / Mohd Nur Fakhruzzaman Noorizhab

Thermophile is a group of microorganisms that are capable of growing at high temperature and the ability that allowed them to do so is termed as thermophily. Geobacilli is an example of thermophile which predominately lives in soils and hot springs. It is a well-known source of thermostable enzymes...

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Main Author: Noorizhab, Mohd Nur Fakhruzzaman
Format: Thesis
Language:English
Published: 2018
Subjects:
Pharmacognosy. Pharmaceutical substances (Plant, animal, and inorganic)
Online Access:http://ir.uitm.edu.my/id/eprint/26972/
http://ir.uitm.edu.my/id/eprint/26972/1/TP_MOHD%20NUR%20FAKHRUZZAMAN%20NOORIZHAB%20PH%2018_5.pdf
id uitm-26972
recordtype eprints
spelling uitm-269722019-12-27T05:01:22Z http://ir.uitm.edu.my/id/eprint/26972/ Systemic biology of Geobacillus thermocatenulatus upon thermal stress induced by high temperature / Mohd Nur Fakhruzzaman Noorizhab Noorizhab, Mohd Nur Fakhruzzaman Pharmacognosy. Pharmaceutical substances (Plant, animal, and inorganic) Thermophile is a group of microorganisms that are capable of growing at high temperature and the ability that allowed them to do so is termed as thermophily. Geobacilli is an example of thermophile which predominately lives in soils and hot springs. It is a well-known source of thermostable enzymes but very little is understood so far in term of the mechanisms that regulate or produce these enzymes. And there may be more hidden biological features of Geobacillus that contribute to better bioresources. This project aimed to investigate the genomic structures of Geobacillus thermocatenulatus A8 and the biological features associated with living in high temperatures. G. thermocatenulatus A8 was sequenced and gene sequences was annotated to biological properties like DNA repair genomics islands (GIs) and CRISPR repeats, preferences for hydrophobic and certain amino acids; and overpresentation of genetic features that are shared with other thermophilic bacilli were investigated. To investigate its thermophily trait, the bacteria were grown in two different temperatures (60 and 70°C) and the differential protein and metabolome profiles expressed were studied using SDS-PAGE and LCMS-QTOF. Through genomic analysis, the bacterial capabilities in producing protease and AMP were determined and the phenotypes were demonstrated on culture plates. Proteome profiles of G. thermocatenulatus A8 grown at optimum growth temperature (OGT) and under thermal stress were compared and different set of proteins were expressed from the bacteria to maintain regular cellular functions. The proteins which were expressed under thermal stress were found to pertubate the lipids and energy metabolisms of thermophile and signalling pathways for motility, membrane transport and amino acid tRNA. The metabolomics study identified 19 differentially expressed compounds which were involved in 5 pathways that were classified into lipids, energy, amino acid and secondary metabolite biosynthesis pathways. The biological properties of G. thermocatenulatus identified in this study highlighted its potential application as source of AMP in addition to other enzymes that were produced. Combination of omics platforms are useful to provide insights on bacteria characteristic to discover untapped biological resources. 2018 Thesis NonPeerReviewed text en http://ir.uitm.edu.my/id/eprint/26972/1/TP_MOHD%20NUR%20FAKHRUZZAMAN%20NOORIZHAB%20PH%2018_5.pdf Noorizhab, Mohd Nur Fakhruzzaman (2018) Systemic biology of Geobacillus thermocatenulatus upon thermal stress induced by high temperature / Mohd Nur Fakhruzzaman Noorizhab. PhD thesis, Universiti Teknologi MARA.
repository_type Digital Repository
institution_category Local University
institution Universiti Teknologi MARA
building UiTM Institutional Repository
collection Online Access
language English
topic Pharmacognosy. Pharmaceutical substances (Plant, animal, and inorganic)
spellingShingle Pharmacognosy. Pharmaceutical substances (Plant, animal, and inorganic)
Noorizhab, Mohd Nur Fakhruzzaman
Systemic biology of Geobacillus thermocatenulatus upon thermal stress induced by high temperature / Mohd Nur Fakhruzzaman Noorizhab
description Thermophile is a group of microorganisms that are capable of growing at high temperature and the ability that allowed them to do so is termed as thermophily. Geobacilli is an example of thermophile which predominately lives in soils and hot springs. It is a well-known source of thermostable enzymes but very little is understood so far in term of the mechanisms that regulate or produce these enzymes. And there may be more hidden biological features of Geobacillus that contribute to better bioresources. This project aimed to investigate the genomic structures of Geobacillus thermocatenulatus A8 and the biological features associated with living in high temperatures. G. thermocatenulatus A8 was sequenced and gene sequences was annotated to biological properties like DNA repair genomics islands (GIs) and CRISPR repeats, preferences for hydrophobic and certain amino acids; and overpresentation of genetic features that are shared with other thermophilic bacilli were investigated. To investigate its thermophily trait, the bacteria were grown in two different temperatures (60 and 70°C) and the differential protein and metabolome profiles expressed were studied using SDS-PAGE and LCMS-QTOF. Through genomic analysis, the bacterial capabilities in producing protease and AMP were determined and the phenotypes were demonstrated on culture plates. Proteome profiles of G. thermocatenulatus A8 grown at optimum growth temperature (OGT) and under thermal stress were compared and different set of proteins were expressed from the bacteria to maintain regular cellular functions. The proteins which were expressed under thermal stress were found to pertubate the lipids and energy metabolisms of thermophile and signalling pathways for motility, membrane transport and amino acid tRNA. The metabolomics study identified 19 differentially expressed compounds which were involved in 5 pathways that were classified into lipids, energy, amino acid and secondary metabolite biosynthesis pathways. The biological properties of G. thermocatenulatus identified in this study highlighted its potential application as source of AMP in addition to other enzymes that were produced. Combination of omics platforms are useful to provide insights on bacteria characteristic to discover untapped biological resources.
format Thesis
author Noorizhab, Mohd Nur Fakhruzzaman
author_facet Noorizhab, Mohd Nur Fakhruzzaman
author_sort Noorizhab, Mohd Nur Fakhruzzaman
title Systemic biology of Geobacillus thermocatenulatus upon thermal stress induced by high temperature / Mohd Nur Fakhruzzaman Noorizhab
title_short Systemic biology of Geobacillus thermocatenulatus upon thermal stress induced by high temperature / Mohd Nur Fakhruzzaman Noorizhab
title_full Systemic biology of Geobacillus thermocatenulatus upon thermal stress induced by high temperature / Mohd Nur Fakhruzzaman Noorizhab
title_fullStr Systemic biology of Geobacillus thermocatenulatus upon thermal stress induced by high temperature / Mohd Nur Fakhruzzaman Noorizhab
title_full_unstemmed Systemic biology of Geobacillus thermocatenulatus upon thermal stress induced by high temperature / Mohd Nur Fakhruzzaman Noorizhab
title_sort systemic biology of geobacillus thermocatenulatus upon thermal stress induced by high temperature / mohd nur fakhruzzaman noorizhab
publishDate 2018
url http://ir.uitm.edu.my/id/eprint/26972/
http://ir.uitm.edu.my/id/eprint/26972/1/TP_MOHD%20NUR%20FAKHRUZZAMAN%20NOORIZHAB%20PH%2018_5.pdf
first_indexed 2023-09-18T23:17:38Z
last_indexed 2023-09-18T23:17:38Z
_version_ 1777419219300777984

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