Dynamic simulation tools for main metabolic pathway of escherichia coli

Metabolic engineering is the study of metabolic pathways modification in one organism by increasing the metabolite production through genetic engineering in order to bring the new and better product in food, feed, pharmaceuticals and many more. The studies of metabolic pathway give opportunity to sc...

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Main Author: Hazwan Arif, Mazlan
Format: Undergraduates Project Papers
Language:English
Published: 2013
Subjects:
Online Access:http://umpir.ump.edu.my/id/eprint/10865/
http://umpir.ump.edu.my/id/eprint/10865/
http://umpir.ump.edu.my/id/eprint/10865/1/HAZWAN%20ARIF%20BIN%20MAZLAN.PDF
id ump-10865
recordtype eprints
spelling ump-108652016-05-09T02:12:10Z http://umpir.ump.edu.my/id/eprint/10865/ Dynamic simulation tools for main metabolic pathway of escherichia coli Hazwan Arif, Mazlan QA Mathematics QA76 Computer software Metabolic engineering is the study of metabolic pathways modification in one organism by increasing the metabolite production through genetic engineering in order to bring the new and better product in food, feed, pharmaceuticals and many more. The studies of metabolic pathway give opportunity to scientists to discover a new phenomenon in cells and proposed many mathematical models for each of the cells behavior. Most of the cells used in experiments are Escherichia coli (E. coli). However, conducting experiments of E. coli are time and money consuming and scientists found it the existing dynamic simulators are complex in order to simulate the proposed mathematical model and some of them prefer to do hardcode simulation. These problems give opportunity to computer scientist to develop the dynamic simulation tools for main metabolic pathway of E. coli that are simpler than the existing tools. The development tools used for the project are Visual Studio 2010. The dynamic simulation tools contain of 2 main modules – Metabolites configurations and Graph configurations. User needs to undergo four ( 4 ) tab pages in Metabolites Configurations module and two ( 2 ) tab pages in Graph Configurations. The technique used in this project is Ordinary Differential Equations ( ODE ) of Runge-Kutta. 2013-12 Undergraduates Project Papers NonPeerReviewed application/pdf en http://umpir.ump.edu.my/id/eprint/10865/1/HAZWAN%20ARIF%20BIN%20MAZLAN.PDF Hazwan Arif, Mazlan (2013) Dynamic simulation tools for main metabolic pathway of escherichia coli. Faculty of Computer System And Software Engineering, Universiti Malaysia Pahang. http://iportal.ump.edu.my/lib/item?id=chamo:83485&theme=UMP2
repository_type Digital Repository
institution_category Local University
institution Universiti Malaysia Pahang
building UMP Institutional Repository
collection Online Access
language English
topic QA Mathematics
QA76 Computer software
spellingShingle QA Mathematics
QA76 Computer software
Hazwan Arif, Mazlan
Dynamic simulation tools for main metabolic pathway of escherichia coli
description Metabolic engineering is the study of metabolic pathways modification in one organism by increasing the metabolite production through genetic engineering in order to bring the new and better product in food, feed, pharmaceuticals and many more. The studies of metabolic pathway give opportunity to scientists to discover a new phenomenon in cells and proposed many mathematical models for each of the cells behavior. Most of the cells used in experiments are Escherichia coli (E. coli). However, conducting experiments of E. coli are time and money consuming and scientists found it the existing dynamic simulators are complex in order to simulate the proposed mathematical model and some of them prefer to do hardcode simulation. These problems give opportunity to computer scientist to develop the dynamic simulation tools for main metabolic pathway of E. coli that are simpler than the existing tools. The development tools used for the project are Visual Studio 2010. The dynamic simulation tools contain of 2 main modules – Metabolites configurations and Graph configurations. User needs to undergo four ( 4 ) tab pages in Metabolites Configurations module and two ( 2 ) tab pages in Graph Configurations. The technique used in this project is Ordinary Differential Equations ( ODE ) of Runge-Kutta.
format Undergraduates Project Papers
author Hazwan Arif, Mazlan
author_facet Hazwan Arif, Mazlan
author_sort Hazwan Arif, Mazlan
title Dynamic simulation tools for main metabolic pathway of escherichia coli
title_short Dynamic simulation tools for main metabolic pathway of escherichia coli
title_full Dynamic simulation tools for main metabolic pathway of escherichia coli
title_fullStr Dynamic simulation tools for main metabolic pathway of escherichia coli
title_full_unstemmed Dynamic simulation tools for main metabolic pathway of escherichia coli
title_sort dynamic simulation tools for main metabolic pathway of escherichia coli
publishDate 2013
url http://umpir.ump.edu.my/id/eprint/10865/
http://umpir.ump.edu.my/id/eprint/10865/
http://umpir.ump.edu.my/id/eprint/10865/1/HAZWAN%20ARIF%20BIN%20MAZLAN.PDF
first_indexed 2023-09-18T22:10:58Z
last_indexed 2023-09-18T22:10:58Z
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