Ant Colony Optimisation with Unified Nearest-Neighbour Thermodynamic Parameter for DNA Sequence Design in DNA Computing

The process of designing a set of good DNA sequences is an essential problem and one of the most practical and important research topics in DNA-based computing. In this field of research, a DNA sequence design problem is defined as a multi-objective problem, and it is evaluated using four objective...

Full description

Bibliographic Details
Main Authors:	Zuwairie, Ibrahim, Mohd Falfazli, Mat Jusof, Mohd Zaidi, Mohd Tumari
Format:	Conference or Workshop Item
Published:	2014
Subjects:	TK Electrical engineering. Electronics Nuclear engineering
Online Access:	http://umpir.ump.edu.my/id/eprint/9218/ http://umpir.ump.edu.my/id/eprint/9218/

id	ump-9218
recordtype	eprints
spelling	ump-92182018-02-21T02:41:08Z http://umpir.ump.edu.my/id/eprint/9218/ Ant Colony Optimisation with Unified Nearest-Neighbour Thermodynamic Parameter for DNA Sequence Design in DNA Computing Zuwairie, Ibrahim Mohd Falfazli, Mat Jusof Mohd Zaidi, Mohd Tumari TK Electrical engineering. Electronics Nuclear engineering The process of designing a set of good DNA sequences is an essential problem and one of the most practical and important research topics in DNA-based computing. In this field of research, a DNA sequence design problem is defined as a multi-objective problem, and it is evaluated using four objective functions, which are h-measure, similarity, continuity, and hairpin. In addition, two constraints, GC content and melting temperature, are used to maintain uniform chemical characteristics of the sequences. In the authors' previous research, ant colony system (ACS) was proposed to solve the DNA sequence design problem and the Watson-Crick base pair ÄGo37 was used as the distance between nodes in the computational model of DNA sequence design. In the current study, the use of other parameters, namely, unified near estneighbour thermodynamic parameters, are investigated and the result is compared with the previous work. 2014 Conference or Workshop Item PeerReviewed Zuwairie, Ibrahim and Mohd Falfazli, Mat Jusof and Mohd Zaidi, Mohd Tumari (2014) Ant Colony Optimisation with Unified Nearest-Neighbour Thermodynamic Parameter for DNA Sequence Design in DNA Computing. In: International Conference on Soft Computing and Machine Intelligence (ISCMI), 26-27 September 2014 , New Delhi. pp. 20-23.. http://dx.doi.org/10.1109/ISCMI.2014.40
repository_type	Digital Repository
institution_category	Local University
institution	Universiti Malaysia Pahang
building	UMP Institutional Repository
collection	Online Access
topic	TK Electrical engineering. Electronics Nuclear engineering
spellingShingle	TK Electrical engineering. Electronics Nuclear engineering Zuwairie, Ibrahim Mohd Falfazli, Mat Jusof Mohd Zaidi, Mohd Tumari Ant Colony Optimisation with Unified Nearest-Neighbour Thermodynamic Parameter for DNA Sequence Design in DNA Computing
description	The process of designing a set of good DNA sequences is an essential problem and one of the most practical and important research topics in DNA-based computing. In this field of research, a DNA sequence design problem is defined as a multi-objective problem, and it is evaluated using four objective functions, which are h-measure, similarity, continuity, and hairpin. In addition, two constraints, GC content and melting temperature, are used to maintain uniform chemical characteristics of the sequences. In the authors' previous research, ant colony system (ACS) was proposed to solve the DNA sequence design problem and the Watson-Crick base pair ÄGo37 was used as the distance between nodes in the computational model of DNA sequence design. In the current study, the use of other parameters, namely, unified near estneighbour thermodynamic parameters, are investigated and the result is compared with the previous work.
format	Conference or Workshop Item
author	Zuwairie, Ibrahim Mohd Falfazli, Mat Jusof Mohd Zaidi, Mohd Tumari
author_facet	Zuwairie, Ibrahim Mohd Falfazli, Mat Jusof Mohd Zaidi, Mohd Tumari
author_sort	Zuwairie, Ibrahim
title	Ant Colony Optimisation with Unified Nearest-Neighbour Thermodynamic Parameter for DNA Sequence Design in DNA Computing
title_short	Ant Colony Optimisation with Unified Nearest-Neighbour Thermodynamic Parameter for DNA Sequence Design in DNA Computing
title_full	Ant Colony Optimisation with Unified Nearest-Neighbour Thermodynamic Parameter for DNA Sequence Design in DNA Computing
title_fullStr	Ant Colony Optimisation with Unified Nearest-Neighbour Thermodynamic Parameter for DNA Sequence Design in DNA Computing
title_full_unstemmed	Ant Colony Optimisation with Unified Nearest-Neighbour Thermodynamic Parameter for DNA Sequence Design in DNA Computing
title_sort	ant colony optimisation with unified nearest-neighbour thermodynamic parameter for dna sequence design in dna computing
publishDate	2014
url	http://umpir.ump.edu.my/id/eprint/9218/ http://umpir.ump.edu.my/id/eprint/9218/
first_indexed	2023-09-18T22:07:34Z
last_indexed	2023-09-18T22:07:34Z
_version_	1777414810335444992

Ant Colony Optimisation with Unified Nearest-Neighbour Thermodynamic Parameter for DNA Sequence Design in DNA Computing

Similar Items