An Extension of DNA Splicing Systems

The first mathematical model of a splicing system that was analyzed in the framework of Formal Language Theory was developed in 1987 by Head. This model consists of a finite alphabet, a finite set of initial strings over the alphabet, and a finite set of rules that act upon the strings by iterated...

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Main Authors:	Yuhani, Yusof, Nor Haniza, Sarmin, Mazri, Mahmud, T., Elizabeth Goode, Fong, Wan Heng
Format:	Conference or Workshop Item
Language:	English
Published:	2011
Subjects:	QA Mathematics
Online Access:	http://umpir.ump.edu.my/id/eprint/9528/ http://umpir.ump.edu.my/id/eprint/9528/ http://umpir.ump.edu.my/id/eprint/9528/1/6.%202011-%20PI-%20Scopus-%20An%20Extension%20of%20DNA%20Splicing%20System.pdf

id	ump-9528
recordtype	eprints
spelling	ump-95282018-05-18T01:00:09Z http://umpir.ump.edu.my/id/eprint/9528/ An Extension of DNA Splicing Systems Yuhani, Yusof Nor Haniza, Sarmin Mazri, Mahmud T., Elizabeth Goode Fong, Wan Heng QA Mathematics The first mathematical model of a splicing system that was analyzed in the framework of Formal Language Theory was developed in 1987 by Head. This model consists of a finite alphabet, a finite set of initial strings over the alphabet, and a finite set of rules that act upon the strings by iterated cutting and pasting, generating new strings. In this paper, a new notation for writing rules in a splicing system and a new extension of splicing systems is introduced in order to make the biological process transparent. These are called Yusof-Goode rules, and they are associated with Yusof-Goode splicing systems. Four different classes of splicing systems are discussed: null-context, uniform, simple and SkH systems. Also, counterexamples are given to illustrate relationships between these splicing system classes. 2011-12 Conference or Workshop Item PeerReviewed application/pdf en http://umpir.ump.edu.my/id/eprint/9528/1/6.%202011-%20PI-%20Scopus-%20An%20Extension%20of%20DNA%20Splicing%20System.pdf Yuhani, Yusof and Nor Haniza, Sarmin and Mazri, Mahmud and T., Elizabeth Goode and Fong, Wan Heng (2011) An Extension of DNA Splicing Systems. In: Proceedings of the Sixth International Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA 2011), 27-29 September 2011 , Penang, Malaysia. pp. 246-248.. http://dx.doi.org/10.1109/BIC-TA.2011.67
repository_type	Digital Repository
institution_category	Local University
institution	Universiti Malaysia Pahang
building	UMP Institutional Repository
collection	Online Access
language	English
topic	QA Mathematics
spellingShingle	QA Mathematics Yuhani, Yusof Nor Haniza, Sarmin Mazri, Mahmud T., Elizabeth Goode Fong, Wan Heng An Extension of DNA Splicing Systems
description	The first mathematical model of a splicing system that was analyzed in the framework of Formal Language Theory was developed in 1987 by Head. This model consists of a finite alphabet, a finite set of initial strings over the alphabet, and a finite set of rules that act upon the strings by iterated cutting and pasting, generating new strings. In this paper, a new notation for writing rules in a splicing system and a new extension of splicing systems is introduced in order to make the biological process transparent. These are called Yusof-Goode rules, and they are associated with Yusof-Goode splicing systems. Four different classes of splicing systems are discussed: null-context, uniform, simple and SkH systems. Also, counterexamples are given to illustrate relationships between these splicing system classes.
format	Conference or Workshop Item
author	Yuhani, Yusof Nor Haniza, Sarmin Mazri, Mahmud T., Elizabeth Goode Fong, Wan Heng
author_facet	Yuhani, Yusof Nor Haniza, Sarmin Mazri, Mahmud T., Elizabeth Goode Fong, Wan Heng
author_sort	Yuhani, Yusof
title	An Extension of DNA Splicing Systems
title_short	An Extension of DNA Splicing Systems
title_full	An Extension of DNA Splicing Systems
title_fullStr	An Extension of DNA Splicing Systems
title_full_unstemmed	An Extension of DNA Splicing Systems
title_sort	extension of dna splicing systems
publishDate	2011
url	http://umpir.ump.edu.my/id/eprint/9528/ http://umpir.ump.edu.my/id/eprint/9528/ http://umpir.ump.edu.my/id/eprint/9528/1/6.%202011-%20PI-%20Scopus-%20An%20Extension%20of%20DNA%20Splicing%20System.pdf
first_indexed	2023-09-18T22:08:11Z
last_indexed	2023-09-18T22:08:11Z
_version_	1777414849546944512

An Extension of DNA Splicing Systems

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